MOLGENIS compute

MOLGENIS Compute is a framework for bioinformatics that enables large-scale data and computational workflow management in a distributed execution environment. It has been used for the analysis of the Genome of the Netherlands project.

Documentation

• Genome of the Netherlands
• Compute framework tutorial
• Imputation pipeline
• Next-generation sequencing pipeline
• Installation of tools

Recent presentations at:

• IWSG-2013 (June 2013)
• Target conference (April 2013)
• eBioGrid (December 2012)
• NBIC BioAssist (October 2012)

Publications

• Scaling bio-analyses from computational clusters to grids (2013)
• Introducing Data Provenance and Error Handling for NGS Workflows within the MOLGENIS Computational Framework (2012)
• Towards a MOLGENIS based computational framework (2011)

Downloads

• Compiled MOLGENIS Compute v4 distribution of 2013-03-08
• Source code repository at GitHub