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UMCG Research prize to Lude Franke

The UMCG Research prize was awarded to Lude Franke at the New Year Reception, held on January 6th. This is in recognition of his achievements over the past few years: gaining an ERC starting grant, an NWO-VIDI, and publishing many papers in top journals. For more information see his personal page

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Harm Jan Westra awarded a Rubicon grant

Harm Jan Westra has been awarded a Rubicon grant by NWO for a project proposal entitled “Localizing autoimmune disease alleles to CD4+ cell state-specific regulatory regions”. He is currently working as a postdoc in Boston under Dr Soumya Raychaudhuri, at Brigham and Women’s Hospital. He is the only UMCG recipient of a Rubicon in this round.

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Lude Franke awarded ERC Starting Grant (€1.5m)

New ‘big data’ approach to identify environmental risk factors for disease Lude Franke (Department of Genetics, UMCG) has been awarded an ERC Starting Grant (€1,500,000) to identify new environmental risk factors for immune diseases. Many diseases have a genetic background but other environmental risk factors (such as viral or bacterial infections) must also play an important role. However, for most diseases these environmental risk factors are still unknown. In this project Lude Franke will identify these risk factors by using large amounts of genetic and gene expression data to study the interplay between genetic risk factors, the role of different

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Lude Franke appointed associate professor

The Department of Genetics is pleased to announce that as of 1st July 2014, Lude Franke has been appointed as an associate professor. We congratulate him on his new position. On behalf of the Management Team, Cisca Wijmenga, Head of department (N.B. This level is equivalent to UHD/adjunct hoogleraar in the Dutch university system or senior lecturer in the British system.)

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The genetics of coeliac disease

Read an interview with Cisca Wijmenga about some of her work. She “is fascinated by the study of coeliac disease; here, she discusses her close connection to the history of the field, the changes brought about by new sequencing methods and the importance of collaboration”. Read about:   Navigating the non-coding regions of the genome  –  Genome of the Netherlands   —  Non-coding RNA  –  Coeliac disease the facts  –  Genetic risk profiling The project “Coeliac disease: from lincRNAs to disease mechanism (CD-Link)”  is supported by an ERC Advanced Investigator grant. By Josh Gabbatiss. Published courtesy of International Innovation – a leading scientific dissemination service. Link to full

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BBMRI-NL2.0 awarded €9.8 million

BBMRI-NL2.0: building on the Dutch biobank On Tuesday 1st July, BBMRI-NL2.0 was awarded €9.8 million as part of the National Roadmap of Large Research Infrastructures. It is one of six facilities receiving a grant from NWO. The award was announced during a ceremony at Leiden University Medical Centre. Professor Cisca Wijmenga (UMCG) is director of this large-scale biobanking project. (BBMRI stands for Biobanking and Biomolecular Research Infrastructure) BBMRI-NL will join forces with EPI2 and CTMM-TraIT in July 2014  │   BBMRI-NL embarks upon its second phase: BBMRI-NL2.0 The new endeavour will comprise BBMRI-NL and all the biobanks connected with it.

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Dutch genome deciphered

The family tree of the Dutch people has been deciphered by researchers at 5 Dutch universities under the leadership of Prof. Cisca Wijmenga of the UMCG in Groningen. The early history of the Dutch can be re-written and diseases can be better predicted. The research is described in a Nature Genetics article published yesterday. `Paul de Bakker, Cisca Wijmenga and colleagues report on The Genome of the Netherlands Project, including whole-genome sequencing of 769 individuals of Dutch ancestry from 250 parent-offspring families and construction of a phased haplotype map. Their intermediate-coverage population sequencing data set provides a complementary resource to

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2 VIDI grants awarded

May 2014: NWO (Netherlands Organisation for Scientific Research) has awarded VIDI grants to Jingyuan Fu for her project on “Understanding the causal relationships between the host genome, microbiota and lipids” and to Lude Franke for his project on “A novel approach to understanding how DNA variants cause disease”. (1) Understanding the causal relationships between the host genome, microbiota and lipids - Dr. Jingyuan Fu Lipid composition varies widely between human individuals and is associated with many diseases. Numerous studies have shown that the lipid composition can be affected by an individual’s genetic make-up and intestinal microbial composition. Over millions of years, microbes and humans have formed a truly symbiotic relationship.

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GUT paper on coeliac disease in F1000Prime

A recent paper by the Wijmenga group has been selected for F1000Prime. It was recommended as being of special significance in its field by Faculty Member Piero Portincasa. “Improving coeliac disease risk prediction by testing non-HLA variants additional to HLA variants” by Jihane Romanos, …Vinod Kumar, Gosia Trynka, Lude Franke, Agata Szperl, Javier Gutierrez-Achury, Cleo C van Diemen, Roan Kanninga, Soesma A Jankipersadsing, … Cisca Wijmenga, and the PreventCD Group. Published in Gut, 2014 Mar;63(3):415-22. Open access full text. Epub 2013 May 23. “In this paper, the authors highlight the importance of a more comprehensive genetic test for the diagnosis of

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